R/data.R

In stemangiola/zhejiang2020: Introduction to Tidy Transcriptomics

#' pasilla
#'
#' pasilla gene count data in SummarizedExperiment format
#'
#' @format  A SummarizedExperiment object with the 7 pasilla samples. Generated from the code in data-raw/pasilla.R.
#' @source \url{https://bioconductor.org/packages/release/data/experiment/html/pasilla.html}
#' @usage data(pasilla)
"pasilla"

#' dge_list 
#'
#' dge_list  gene count data in SummarizedExperiment format
#'
#' @format  A DGEList object including the GSE63310 dataset
#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63310}
#' @usage data(dge_list)
"dge_list"

#' single_cell_experiment
#'
#' dge_list  gene count data in SingleCellExperiment format
#'
#' @format  A SingleCellExperiment object
#' @source \url{https://osca.bioconductor.org}
#' @usage data(single_cell_experiment)
"single_cell_experiment"