NEWS.md

In statOmics/msqrob2: Robust statistical inference for quantitative LC-MS proteomics

msqrob 1.13

msqrob 1.13.1

• Implemented msqrobAggregate() method for SummarizedExperiment objects.

msqrob 1.13.0

• New Bioconductor devel release 3.20

msqrob 1.12

msqrob 1.12.0

• New Bioconductor stable release 3.19

msqrob 1.11.2

• Fixed issue related to levels of a ridge variable
• Fixed issue when fitting only one random effect

msqrob 1.11.1

• Fixed issues related to reference class changes in the models
• Fixed issue related to colData assay levels
• Refactored internal code

msqrob 1.6.2

• Fixed issues related to residual degrees of freedom of overparameterized models.
• Fixed issue relating to coldata variables as factors.

msqrob2 1.5.4

• Removed the full lmer model that was accidently left in the statmodel object.

msqrob2 1.5.3

• Added the option to use mixed models without ridge regression
• Added the option to use rowdata variables in the mixed models

msqrob2 1.5.1

• Fix weighted variance covariance matrix and QR decomposition in the msqrobLmer function

msqrob2 1.1.1

• Fix filtering steps in vignette: now using QFeatures::filterFeatures()

msqrob2 0.99.6

• Update authors in Description file

msqrob2 0.99.5

• Fix standard errors on the model parameter estimates by msqrobLmer when using doQR = TRUE

msqrob2 0.99.4

• Minor update vignette. Replace eval=FALSE in one R chunk so that the code is evaluated.

msqrob2 0.99.3

• Resolved notes on signalers
• Resolved examples with lines wider than 100 characters
• Avoiding sapply and 1:...

msqrob2 0.99.2

• Added a NEWS.md file to track changes to the package.
• Changed dependency from R (>= 4.0) to R (>= 4.1)
• Updated citation file

Changes in version 0.99.1

• Submission to Bioc

statOmics/msqrob2 documentation built on Dec. 21, 2024, 8:26 a.m.