R/01xcmsRaw-class.R

In sneumann/xcms-presvnbridge: LC/MS and GC/MS Data Analysis

require(methods) || stop("Couldn't load package methods")

setClass("xcmsRaw", representation(env = "environment", tic = "numeric",
                                   scantime = "numeric", scanindex = "integer",
                                   polarity = "factor",
                                   acquisitionNum = "integer",
                                   profmethod = "character", profparam = "list",
                                   mzrange = "numeric", gradient = "matrix",
                                   msnScanindex = "integer",
                                   msnAcquisitionNum = "integer",
                                   msnPrecursorScan = "integer",
                                   msnLevel = "integer",
                                   msnRt = "numeric",
                                   msnPrecursorMz = "numeric",
                                   msnPrecursorIntensity = "numeric",
                                   msnPrecursorCharge = "numeric",
                                   msnCollisionEnergy = "numeric",
                                   filepath = "xcmsSource"),

         prototype(env = new.env(parent=.GlobalEnv), tic = numeric(0),
                   scantime = numeric(0), scanindex = integer(0),
                   polarity = factor(integer(0)),
                   acquisitionNum = integer(0),
                   profmethod = "bin", profparam = list(),
                   mzrange = numeric(0),
                   gradient = matrix(nrow=0, ncol=0),
                   msnScanindex = integer(0),
                   msnAcquisitionNum = integer(0),
                   msnLevel = integer(0),
                   msnRt = numeric(0),
                   msnPrecursorScan = integer(0),
                   msnPrecursorMz = numeric(0),
                   msnPrecursorIntensity = numeric(0),
                   msnPrecursorCharge = numeric(0),
                   msnCollisionEnergy = numeric(0)
                   ))