shaileshtripathi/samExploreR: samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation
This R package is designed for subsampling procedure to simulate sequencing experiments with reduced sequencing depth. This package can be used to anlayze data generated from all major sequencing platforms such as Illumina GA, HiSeq, MiSeq, Roche GS-FLX, ABI SOLiD and LifeTech Ion PGM Proton sequencers. It supports multiple operating systems incluidng Linux, Mac OS X, FreeBSD and Solaris. Was developed with usage of Rsubread.
Getting started
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Package details |
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| Author | Alexey Stupnikov, Shailesh Tripathi and Frank Emmert-Streib |
| Bioconductor views | Alignment ChIPSeq DNASeq GeneExpression GeneRegulation GeneTarget GeneticVariability GenomeAnnotation Preprocessing RNASeq SequenceMatching Sequencing Software WholeGenome |
| Maintainer | shailesh tripathi <shailesh.tripathy@gmail.com> |
| License | GPL-3 |
| Version | 0.99.72 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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