Files in sgibb/topdownr

Investigation of Fragmentation Conditions in Top-Down Proteomics

CONTRIBUTING.md NEWS.md R/AllClasses.R R/AllGenerics.R R/coverage.R R/experiment-functions.R R/fragments.R R/functions-AbstractTopDownSet.R R/functions-FragmentViews.R R/functions-Matrix.R R/functions-NCBSet.R R/functions-TopDownSet.R R/functions-data.frame.R R/import.R R/method-xml.R R/methods-AbstractTopDownSet.R R/methods-FragmentViews.R R/methods-NCBSet.R R/methods-TopDownSet.R R/package-deprecated.R R/package.R R/tds.R R/utils.R R/windows.R R/xml-functions.R R/zzz.R README.md SUPPORT.md data-raw/createInternalMsSettingData.R man/AbstractTopDownSet-class.Rd man/FragmentViews-class.Rd man/NCBSet-class.Rd man/TopDownSet-class.Rd man/createExperimentsFragmentOptimisation.Rd man/expandMsConditions.Rd man/readTopDownFiles.Rd man/tds.Rd man/topdownr-deprecated.Rd man/topdownr-package.Rd man/validMsSettings.Rd man/windows-specific-functions.Rd man/writeMethodXmls.Rd tests/testthat.R tests/testthat/test_AbstractTopDownSet.R tests/testthat/test_FragmentViews.R tests/testthat/test_Matrix.R tests/testthat/test_NCBSet.R tests/testthat/test_TopDownSet.R tests/testthat/test_coverage.R tests/testthat/test_data.frame.R tests/testthat/test_experiment.R tests/testthat/test_fragments.R tests/testthat/test_import.R tests/testthat/test_method-xml.R tests/testthat/test_utils.R tests/testthat/test_xml.R vignettes/analysis.Rmd vignettes/data-generation.Rmd