API for selinj/chromswitch
An R package to detect chromatin state switches from epigenomic data
| Global functions | |
|---|---|
| GRangesToCoord | Man page Source code |
| H3K4me3 | Man page |
| LocalPeaks | Man page Source code |
| LocalPeaks-class | Man page |
| NMI | Man page Source code |
| \S4method{peaks}{LocalPeaks} | Man page |
| \S4method{region}{LocalPeaks} | Man page |
| \S4method{samples}{LocalPeaks} | Man page |
| avgSilhouette | Source code |
| binarizePeaks | Man page Source code |
| callBinary | Man page Source code |
| callSummary | Man page Source code |
| chromswitch | Man page |
| chromswitch-package | Man page |
| classEntropy | Man page Source code |
| cluster | Man page Source code |
| clusterEntropy | Man page Source code |
| clusterValidityPerK | Source code |
| completeness | Man page Source code |
| conditionalClassEntropy | Man page Source code |
| conditionalClusterEntropy | Man page Source code |
| contingencyTable | Source code |
| coordToGRanges | Man page Source code |
| filterPeaks | Man page Source code |
| filterSamplePeaks | Source code |
| getK | Source code |
| getSamplePeakProfile | Source code |
| getUniquePeaks | Source code |
| homogeneity | Man page Source code |
| internalClusterValidity | Source code |
| makeBrowserCoord | Man page Source code |
| normalizePeaks | Man page Source code |
| pReciprocalOverlap | Man page Source code |
| peakOverlap | Source code |
| peaks | Man page |
| peaks,LocalPeaks-method | Man page |
| peaks-method | Man page |
| purity | Man page Source code |
| readNarrowPeak | Man page Source code |
| reducePeaks | Man page Source code |
| region | Man page |
| region,LocalPeaks-method | Man page |
| region-method | Man page |
| retrievePeaks | Man page Source code |
| retrieveSamplePeaks | Source code |
| samples | Man page |
| samples,LocalPeaks-method | Man page |
| samples-method | Man page |
| summarizePeaks | Man page Source code |
| summarizeSamplePeaks | Source code |
| vMeasure | Man page Source code |
| winsorNorm | Man page Source code |
