sandmanns/appreci8R: appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV
The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.
Getting started
Browse package contents
Package details |
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| Author | Sarah Sandmann |
| Bioconductor views | GeneticVariability SNP Sequencing VariantAnnotation VariantDetection |
| Maintainer | Sarah Sandmann <sarah.sandmann@uni-muenster.de> |
| License | LGPL-3 |
| Version | 1.9.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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