Man pages for rvalieris/signeR
Empirical Bayesian approach to mutational signature discovery
| cosmic_data | COSMIC Mutational Signatures |
| Diffexp | Differential Exposure Analysis |
| ExposureClassify | Classify samples by exposure levels |
| ExposureClassifyCV | k-fold cross-validation of sample classifcation by exposure... |
| ExposureCorrelation | Exposure correlation analysis (given a known sample feature) |
| ExposureFuzzyClustering | Fuzzy Clustering of exposure data |
| ExposureGLM | Exposure Generalized Linear Model |
| ExposureHierarchicalClustering | Hierarchical Clustering of exposure data |
| ExposureSurvival | Exposure survival analysis |
| ExposureSurvModel | Exposure Cox model |
| genMatrix | count matrix and opportunity matrix generators |
| methods | SignExp class methods |
| plots | signeR plot functions |
| signeR | signeR |
| signeRFlow | Launch signeRFlow R Shiny web app |
| signeR-package | Empirical Bayesian approach to mutational signature discovery |
| signexp-class | SignExp class |
| tcga_similarities | TCGA Cosmic similarities |
| tcga_tumors | TCGA tumors used on TCGA Explorer |
