inst/script/pathwaysGMT.R
In rosscm/fedup: Fisher's Test for Enrichment and Depletion of User-Defined Pathways
# Download from http://download.baderlab.org/EM_Genesets/November_17_2020/Human/symbol
pathwayFile <- system.file("extdata", "Human_Reactome_November_17_2020_symbol.gmt", package = "fedup")
pathwaysGMT <- readPathways(pathwayFile, minGene = 10, maxGene = 500)
names(pathwaysGMT) <- stringi::stri_trans_general(names(pathwaysGMT), "latin-ascii")
usethis::use_data(pathwaysGMT, compress = "xz", version = 2, overwrite = TRUE)
rosscm/fedup documentation built on July 19, 2021, 2:21 a.m.
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# Download from http://download.baderlab.org/EM_Genesets/November_17_2020/Human/symbol
pathwayFile <- system.file("extdata", "Human_Reactome_November_17_2020_symbol.gmt", package = "fedup")
pathwaysGMT <- readPathways(pathwayFile, minGene = 10, maxGene = 500)
names(pathwaysGMT) <- stringi::stri_trans_general(names(pathwaysGMT), "latin-ascii")
usethis::use_data(pathwaysGMT, compress = "xz", version = 2, overwrite = TRUE)
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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