rnabioco/AVIDtools: A collection of single-cell V(D)J tools

djvdj provides a single-cell V(D)J analysis workflow that integrates with popular single-cell data structures. This includes the ability to cluster CDR3 sequences and to quantify repertoire diversity, repertoire similarity, and gene segment usage. Tools are also provided to generate a variety of visualizations including rarefaction curves, circos plots and UMAP projections.

README.md

Vignettes Man pages API and functions Files

Package details
Bioconductor views	RNASeq Sequencing SingleCell Software
Maintainer
License	MIT + file LICENSE
Version	0.1.0
URL	https://rnabioco.github.io/djvdj/ https://github.com/rnabioco/djvdj/
Package repository	View on GitHub
Installation	Install the latest version of this package by entering the following in R: `install.packages("remotes") remotes::install_github("rnabioco/AVIDtools")`