plotShiraishiModel: plotShiraishiModel (internal function)

In rmpiro/decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting

plotShiraishiModel (internal function)

Description

'plotShiraishiModel()' plots a single signature or the mutation frequency data for a single genome of the Shiraishi-type model.

Usage

plotShiraishiModel(mutData, numBases, trDir, colors = NULL)

Arguments

mutData	(Mandatory) The signature or genome mutation frequency data to be plotted.
numBases	The number of bases of the sequence pattern.
trDir	Logical value specifying whether transcription strand information is present.
colors	Vector of four colors to be used for the base data. If NULL (default), the colors are consensus colors used for sequence logos.

Value

Returns (or draws) a plot according to the Shiraishi model of mutational signatures.

Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <[e-mail]> or <[e-mail]>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

rmpiro/decompTumor2Sig documentation built on May 15, 2022, 3:27 a.m.