NEWS.md

In rformassspectrometry/MsBackendMassbank: Mass Spectrometry Data Backend for MassBank record Files

MsBackendMassbank 1.13

Changes in 1.13.1

• Add extractByIndex() method.

MsBackendMassbank 1.11

Changes in 1.11.2

• Import method generics from ProtGenerics. This requires ProtGenerics version 1.35.3.

Changes in 1.11.1

• Remove additional empty line at the end of exported MassBank records (issue #49).

MsBackendMassbank 1.7

Changes in 1.7.4

• Add backendBpparam for MsBackendMassbankSql; parallel processing of Spectra with MsBackendMassbankSql will silently disable parallel processing.

Changes in 1.7.3

• Add support for EAD parameter.

Changes in 1.7.2

• Avoid export of retention time data if not available.

Changes in 1.7.1

• Run the full test suite from the Spectra package to validate the MsBackend implementations.

MsBackendMassbank 1.3

Changes in 1.3.5

• Add parameter columns to peaksData.

Changes in 1.3.4

• Import and use spectraVariableMapping method from Spectra.

Changes in 1.3.3

• Map comment to spectra variable.

Changes in 1.3.2

• Use in addition unit tests from the Spectra package.
• Add filterPrecursorMzValues and filterPrecursorMzRange.

Changes in 1.3.1

• MsBackendMassbankSql extends Spectra::MsBackendCached to re-use the general caching mechanism provided by that backend.

MsBackendMassbank 1.1

Changes in 1.1.4

• Fix wrong database column name for collision energy.

Changes in 1.1.3

• Change SQL queries to increase performance.

Changes in 1.1.2

• Fix bug in show,MsBackendMassbankSql.

Changes in 1.1.1

• Cache precursor m/z to allow faster queries for spectral matching.

MsBackendMassbank 0.99

Changes in 0.99.4

• Fix an issue in which selectSpectraVariables,MsBackendMassbankSql would fail if subsetted to a single variable/column in @localData issue #29

Changes in 0.99.3

• Drop names on the peaksData.

Changes in 0.99.2

• Minor updates and changes as requested during package review process.

Changes in 0.99.1

• Directly call package internal functions using ::: if used within bplapply to avoid errors on Windows.

Changes in 0.99.0

• Prepare for Bioconductor submission.

rformassspectrometry/MsBackendMassbank documentation built on Sept. 28, 2024, 5:42 a.m.