Files in rcastelo/VariantFiltering
Filtering of coding and non-coding genetic variants
.Rbuildignore
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGeneric.R
R/AllUtilities.R
R/annotationEngine.R
R/autosomalDominant.R
R/autosomalRecessiveHeterozygous.R
R/autosomalRecessiveHomozygous.R
R/deNovo.R
R/defaultFilters.R
R/methods-CutoffsList.R
R/methods-GenePhyloStrataDb.R
R/methods-SequenceOntology.R
R/methods-ShinyApp.R
R/methods-VariantFilteringParam.R
R/methods-VariantFilteringResults.R
R/methods-VariantType-class.R
R/methods-Visualization.R
R/methods-WeightMatrix.R
R/methods-deprecated.R
R/methods-locateVariants.R
R/scoreBindingSiteVariants.R
R/tabPanelAbout.R
R/unrelatedIndividuals.R
R/xLinked.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/AA_chemical_properties_HanadaGojoboriLi2006.tsv
inst/extdata/CEUtrio.ped
inst/extdata/CEUtrio.vcf.bgz
inst/extdata/CEUtrio.vcf.bgz.tbi
inst/extdata/NA12878.subset.bam
inst/extdata/NA12878.subset.bam.bai
inst/extdata/NA12891.subset.bam
inst/extdata/NA12891.subset.bam.bai
inst/extdata/NA12892.subset.bam
inst/extdata/NA12892.subset.bam.bai
inst/extdata/README_SequenceOntology
inst/extdata/README_humanGenesPhylostrata
inst/extdata/hsap.acceptors.hcmc10_15_1.ibn
inst/extdata/hsap.donors.hcmc10_15_1.ibn
inst/extdata/humanCodonUsage.txt
inst/extdata/humanEnsGenePhylostrata.rda
inst/extdata/sequence_variant.gSOXPapril2016.rds
inst/extdata/uind.rds
inst/shinyApp/server.R
inst/shinyApp/ui.R
inst/unitTests/test_VariantFilteringParam-methods.R
inst/unitTests/test_inheritance-models.R
inst/unitTests/test_location-methods.R
man/GenePhylostrataDb-class.Rd
man/VariantFiltering-defunct.Rd
man/VariantFiltering-deprecated.Rd
man/VariantFiltering-package.Rd
man/VariantFilteringParam-class.Rd
man/VariantFilteringResults-class.Rd
man/VariantType-class.Rd
man/WeightMatrix-class.Rd
man/autosomalDominant.Rd
man/autosomalRecessiveHeterozygous.Rd
man/autosomalRecessiveHomozygous.Rd
man/deNovo.Rd
man/readAAradicalChangeMatrix.Rd
man/unrelatedIndividuals.Rd
man/xLinked.Rd
src/Biostrings_stubs.c
src/R_init_VariantFiltering.c
src/VariantFiltering.h
src/methods-WeightMatrix.c
tests/runTests.R
vignettes/shinysnapshotVariantFiltering.jpg
vignettes/usingVariantFiltering.Rnw
