examples/ex_wrapperRunClustering.R

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

data(Exp1_R25_prot, package="DAPARdata")
obj <- Exp1_R25_prot[seq_len(1000)]
level <- 'protein'
metacell.mask <- match.metacell(GetMetacell(obj), c("Missing POV", "Missing MEC"), level)
indices <- GetIndices_WholeMatrix(metacell.mask, op = ">=", th = 1)
obj <- MetaCellFiltering(obj, indices, cmd = "delete")
expR25_ttest <- compute_t_tests(obj$new)
wrapperRunClustering(
  obj = obj$new,
    adjusted_pvals = expR25_ttest$P_Value$`25fmol_vs_10fmol_pval`
)