wrapper.impute.detQuant: Wrapper of the function 'impute.detQuant()' for objects of...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Wrapper of the function 'impute.detQuant()' for objects of class MSnSet

Description

This method is a wrapper of the function 'impute.detQuant()' for objects of class MSnSet

Usage

wrapper.impute.detQuant(obj, qval = 0.025, factor = 1, na.type)

Arguments

obj	An instance of class MSnSet
qval	An expression set containing quantitative values of various replicates
factor	A scaling factor to multiply the imputation value with
na.type	A string which indicates the type of missing values to impute. Available values are: 'NA' (for both POV and MEC), 'POV', 'MEC'.

Value

An imputed instance of class MSnSet

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept[seq_len(10)]
obj.imp.pov <- wrapper.impute.detQuant(obj, na.type = "Missing POV")
obj.imp.mec <- wrapper.impute.detQuant(obj, na.type = "Missing MEC")

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.