scatterplotEnrichGO_HC: A dotplot that shows the result of a GO enrichment, using the...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

A dotplot that shows the result of a GO enrichment, using the package highcharter

Description

A scatter plot of GO enrichment analysis

Usage

scatterplotEnrichGO_HC(ego, maxRes = 10, title = NULL)

Arguments

ego	The result of the GO enrichment, provides either by the function enrichGO in DAPAR or the function enrichGO of the packaage 'clusterProfiler'
maxRes	The maximum number of categories to display in the plot
title	The title of the plot

Value

A dotplot

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_prot, package="DAPARdata")
obj <- Exp1_R25_prot
if (!requireNamespace("org.Sc.sgd.db", quietly = TRUE)) {
stop("Please install org.Sc.sgd.db: 
            BiocManager::install('org.Sc.sgd.db')")
}
library(org.Sc.sgd.db)
univ <- univ_AnnotDbPkg("org.Sc.sgd.db")
ego <- enrich_GO(
    data = Biobase::fData(obj)$Protein.IDs, idFrom = "UNIPROT",
    orgdb = "org.Sc.sgd.db", ont = "MF", pval = 0.05, universe = univ
)
scatterplotEnrichGO_HC(ego)

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.