getIndicesOfLinesToRemove: Get the indices of the lines to delete, based on a prefix...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Get the indices of the lines to delete, based on a prefix string

Description

Get the indices of the lines to delete, based on a prefix string

Usage

getIndicesOfLinesToRemove(obj, idLine2Delete = NULL, prefix = NULL)

Arguments

obj	An object of class MSnSet.
idLine2Delete	The name of the column that correspond to the data to filter
prefix	A character string that is the prefix to find in the data

Value

A vector of integers.

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
ind <- getIndicesOfLinesToRemove(Exp1_R25_pept[seq_len(100)], 
"Potential_contaminant",
    prefix = "+"
)

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.