GetIndices_BasedOnConditions: Search lines which respects request on one or more...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Search lines which respects request on one or more conditions.

Description

This function looks for the lines that respect the request in either all conditions or at least one condition.

Usage

GetIndices_BasedOnConditions(metacell.mask, type, conds, percent, op, th)

Arguments

metacell.mask	xxx
type	Available values are: * 'AllCond' (the query is valid in all the conditions), * 'AtLeatOneCond' (the query is valid in at leat one condition.
conds	xxx
percent	xxx
op	String for operator to use. List of operators is available with SymFilteringOperators().
th	The theshold to apply

Value

xxx

Examples

data(Exp1_R25_pept, package="DAPARdata")
obj <- Exp1_R25_pept[seq_len(10)]
level <- GetTypeofData(obj)
pattern <- 'Missing'
metacell.mask <- match.metacell(metadata=GetMetacell(obj), 
pattern=pattern, level=level)
type <- 'AllCond'
conds <- Biobase::pData(obj)$Condition
op <- '>='
th <- 0.5
percent <- TRUE
ind <- GetIndices_BasedOnConditions(metacell.mask, type, conds, 
percent, op, th)

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.