GetCC: Returns the contains of the slot processing of an object of...

In prostarproteomics/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Returns the contains of the slot processing of an object of class MSnSet

Description

Returns the contains of the slot processing of an object of class MSnSet

Usage

GetCC(obj)

Arguments

obj	An object (peptides) of class MSnSet.

Value

A list of connected components

Author(s)

Samuel Wieczorek

Examples

data(Exp1_R25_pept, package="DAPARdata")
Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)], 
"Protein_group_IDs",  FALSE)
Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[seq_len(100)], 
"Protein_group_IDs", TRUE)
ll.X <- list(matWithSharedPeptides = Xshared, 
matWithUniquePeptides = Xunique)
Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
ll1 <- get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithSharedPeptides)
ll2 <- get.pep.prot.cc(
GetMatAdj(Exp1_R25_pept)$matWithUniquePeptides)
cc <- list(allPep = ll1, onlyUniquePep = ll2)
Exp1_R25_pept <- SetCC(Exp1_R25_pept, cc)
ll.cc <- GetCC(Exp1_R25_pept)

prostarproteomics/DAPAR documentation built on Oct. 11, 2024, 12:03 p.m.