mm9.gene.counts: mouse RNA-Seq data with two conditions, four samples

In pmoulos/metaseqr: An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

Description

This data set contains RNA-Seq gene read counts for 3 chromosomes. The data were downloaded from the ENCODE public repository and are derived from the study of Mortazavi et al., 2008 (Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008 Jul;5(7):621-8). In their experiment, the authors studied among others genes expression at two developmental stages of mouse liver cells. It has two conditions-developmental stages (e14.5, adult_8_weeks) and four samples (e14.5_1, e14.5_2, a8w_1, a8w_2). It also contains a predefined sample.list and libsize.list named sample.list.mm9 and libsize.list.mm9.

Format

a data.frame with gene read counts and some embedded annotation, one row per gene.

Author(s)

Panagiotis Moulos

Source

ENCODE (http://genome.ucsc.edu/encode/)

pmoulos/metaseqr documentation built on Dec. 29, 2020, 5:56 a.m.