pmb59/CexoR: An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.
Getting started
Browse package contents
Package details |
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| Bioconductor views | ChIPSeq Coverage FunctionalGenomics PeakDetection Sequencing |
| Maintainer | |
| License | Artistic-2.0 | GPL-2 + file LICENSE |
| Version | 1.35.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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