MassSqliteEntry: Mass spectra SQLite entry class.

In pkrog/biodb: biodb, a library and a development framework for connecting to chemical and biological databases

Mass spectra SQLite entry class.

Description

This is the entry class for a Mass spectra SQLite database.

Super classes

biodb::BiodbEntry -> biodb::BiodbListEntry -> MassSqliteEntry

Methods

Public methods

• MassSqliteEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()
• biodb::BiodbEntry$cloneInstance()
• biodb::BiodbEntry$computeFields()
• biodb::BiodbEntry$fieldHasBasicClass()
• biodb::BiodbEntry$getBiodb()
• biodb::BiodbEntry$getDbClass()
• biodb::BiodbEntry$getField()
• biodb::BiodbEntry$getFieldCardinality()
• biodb::BiodbEntry$getFieldClass()
• biodb::BiodbEntry$getFieldDef()
• biodb::BiodbEntry$getFieldNames()
• biodb::BiodbEntry$getFieldValue()
• biodb::BiodbEntry$getFieldsAsDataframe()
• biodb::BiodbEntry$getFieldsAsJson()
• biodb::BiodbEntry$getFieldsByType()
• biodb::BiodbEntry$getId()
• biodb::BiodbEntry$getName()
• biodb::BiodbEntry$getParent()
• biodb::BiodbEntry$hasField()
• biodb::BiodbEntry$initialize()
• biodb::BiodbEntry$isNew()
• biodb::BiodbEntry$makesRefToEntry()
• biodb::BiodbEntry$parentIsAConnector()
• biodb::BiodbEntry$parseContent()
• biodb::BiodbEntry$print()
• biodb::BiodbEntry$removeField()
• biodb::BiodbEntry$setField()
• biodb::BiodbEntry$setFieldValue()

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Method clone()

The objects of this class are cloneable with this method.

Usage

MassSqliteEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

See Also

Super class BiodbListEntry.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Get path to LCMS database example file
lcmsdb <- system.file("extdata", "massbank_extract.sqlite", package="biodb")

# Create a connector
conn <- mybiodb$getFactory()$createConn('mass.sqlite', url=lcmsdb)

# Get an entry
e <- conn$getEntry('34.pos.col12.0.78')

# Terminate instance.
mybiodb$terminate()

pkrog/biodb documentation built on Nov. 29, 2022, 4:24 a.m.