hisat_QC_align: performs qc on fastq file
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
hisat_QC_align R Documentation
performs qc on fastq file
Description
aligns fastq to genomes indexed and pointed to by indexDF, counts features aligning to target
Usage
hisat_QC_align(fastq, indexDF, sname, target = "mouse",
hisatDir = "~/rnaseq/hisat2-2.0.3-beta")
Arguments
fastq
file name
indexDF
index data frame result of running hisat_findIndices
sname
col name
target
species/genome
hisatDir
path to hisat
Value
sampTab with hisat QC stats added AND features counts vs target genome
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| hisat_QC_align | R Documentation |
performs qc on fastq file
Description
aligns fastq to genomes indexed and pointed to by indexDF, counts features aligning to target
Usage
hisat_QC_align(fastq, indexDF, sname, target = "mouse",
hisatDir = "~/rnaseq/hisat2-2.0.3-beta")
Arguments
fastq |
file name |
indexDF |
index data frame result of running hisat_findIndices |
sname |
col name |
target |
species/genome |
hisatDir |
path to hisat |
Value
sampTab with hisat QC stats added AND features counts vs target genome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.