cn_specGenesAll: finds general and context dependent specifc genes

In pcahan1/CellNet: Assess and improve cell fate engineering with network biology

finds general and context dependent specifc genes

Description

finds general and context dependent specifc genes

Usage

cn_specGenesAll(expDat, sampTab, holm = 1e-10, cval = 0.5,
  cvalGK = 0.75, dLevel = "description1", dLevelGK = "description2",
  prune = FALSE)

Arguments

expDat	expression matrix
sampTab	sample table
holm	pvalue threshold for template matching
cval	template matching threshold for overall CT specific expression
cvalGK	template matching threshold for developmentally shared CT specific expression
dLevel	"description1",
dLevelGK	"description2"

Value

list of $matcher$cell_type->germ_layer$context$general$cell_type->gene vector etc

pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.