whichstrand_-: Setter method for the 'whichstrand' slot in a...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Setter method for the whichstrand slot in a
parameterOptions object
Usage
1
whichstrand(object) <- value
Arguments
object
object is a parameterOptions object
value
value is a character string specifying which strand should be
used to compute PWM Scores. The three available options are the
following: "+","-" or "+-". Default is "+-"
Details
PWM Score may be computed on either the positive strand ("+"),
the negative strand ("-") or on both strands ("+-").
Value
Returns a parameterOptions object with an updated
value for the whichstrand slot
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
5
6
7
# Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions( whichstrand="+-")
#Setting New Value for whichstrand
whichstrand(GPP) <- "+"
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Setter method for the whichstrand slot in a
parameterOptions object
Usage
1 | whichstrand(object) <- value
|
Arguments
object |
|
value |
|
Details
PWM Score may be computed on either the positive strand ("+"), the negative strand ("-") or on both strands ("+-").
Value
Returns a parameterOptions object with an updated
value for the whichstrand slot
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 5 6 7 | # Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions( whichstrand="+-")
#Setting New Value for whichstrand
whichstrand(GPP) <- "+"
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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