removeBackground_-: Setter Method for the 'removeBackground' slot in a...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Setter Method for the removeBackground slot in a
parameterOptions object
Usage
1
removeBackground(object) <-value
Arguments
object
object is an parameterOptions object
value
value is positive numerical value to be assigned to the
removeBackground slot in a parameterOptions
object. Default is set a 0.
Details
A numeric value describing a threshold at which Occupancy signals must be
removed (Default is set at 0). The removal of Occupancy signals will occur
when computing computeOccupancy
(see computeOccupancy function)
Value
Returns an parameterOptions object with an updated
value for the removeBackground slot
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
#Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for removeBackground
removeBackground(OPP) <- 0.1
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Setter Method for the removeBackground slot in a
parameterOptions object
Usage
1 | removeBackground(object) <-value
|
Arguments
object |
|
value |
|
Details
A numeric value describing a threshold at which Occupancy signals must be
removed (Default is set at 0). The removal of Occupancy signals will occur
when computing computeOccupancy
(see computeOccupancy function)
Value
Returns an parameterOptions object with an updated
value for the removeBackground slot
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 | #Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for removeBackground
removeBackground(OPP) <- 0.1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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