ploidy: Accessor method for the 'ploidy' slot in a 'parameterOptions'...
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
ploidy R Documentation
Accessor method for the ploidy slot in a
parameterOptions object
Description
Accessor method for the ploidy slot in a
parameterOptions object
Usage
ploidy(object)
Arguments
object
object is a parameterOptions object
Details
Default value for ploidy is set a 2. It should be mentioned that
ChIPanalyser is based on a model that also considers the ploidy of the
organism of interest however this only considers simple polyploidy
(or haploidy). The model does not consider hybrids such as wheat.
Value
Returns the value assigned to the ploidy slot in a
parameterOptions object
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
ploidy(OPP)
patrickCNMartin/ChIPanalyser documentation built on Nov. 24, 2022, 12:02 a.m.
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| ploidy | R Documentation |
Accessor method for the ploidy slot in a
parameterOptions object
Description
Accessor method for the ploidy slot in a
parameterOptions object
Usage
ploidy(object)
Arguments
object |
|
Details
Default value for ploidy is set a 2. It should be mentioned that
ChIPanalyser is based on a model that also considers the ploidy of the
organism of interest however this only considers simple polyploidy
(or haploidy). The model does not consider hybrids such as wheat.
Value
Returns the value assigned to the ploidy slot in a
parameterOptions object
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object OPP <- parameterOptions() #Setting new Value for maxSignal ploidy(OPP)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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