paolopavan/medips: DNA IP-seq data analysis
MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.
Getting started
Browse package contents
Package details |
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| Author | Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado |
| Bioconductor views | ChIPSeq CopyNumberVariation Coverage CpGIsland DNAMethylation DifferentialExpression Genetics GenomeAnnotation Microarray Preprocessing QualityControl SequenceMatching Sequencing Visualization |
| Maintainer | Lukas Chavez <l.chavez@dkfz.de> |
| License | GPL (>=2) |
| Version | 1.23.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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