loadAnnotation: Load alternative splicing annotation from 'AnnotationHub'

In nuno-agostinho/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Load alternative splicing annotation from AnnotationHub

Description

Load alternative splicing annotation from AnnotationHub

Usage

loadAnnotation(annotation, cache = getAnnotationHubOption("CACHE"))

Arguments

annotation	Character: annotation to load
cache	Character: path to AnnotationHub cache (used to load alternative splicing event annotation)

Value

List of data frames containing the alternative splicing annotation per event type

See Also

Other functions for PSI quantification: filterPSI(), getSplicingEventTypes(), listSplicingAnnotations(), plotRowStats(), quantifySplicing()

Examples

human <- listSplicingAnnotations(species="Homo sapiens")[[1]]
## Not run: 
annot <- loadAnnotation(human)

## End(Not run)

nuno-agostinho/psichomics documentation built on Feb. 11, 2024, 11:16 p.m.