width_boxplot: Peak width boxplot
In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets

width_boxplot

R Documentation

Peak width boxplot

Description

This function creates boxplots showing the distribution of widths in each peak file.

Usage

width_boxplot(peaklist, interact = FALSE)

Arguments

`peaklist`	A list of peak files as GRanges object. Files must be named and listed using `list()`. e.g. `list("name1"=file1, "name2"=file2)`
`interact`	Default TRUE. By default, plots are interactive. If set FALSE, all plots in the report will be static.

Value

A boxplot of peak widths.

Examples

### Load Data ###
data("encode_H3K27ac") # example peaklist GRanges object
data("CnT_H3K27ac") # example peaklist GRanges object  
peaklist <- list("encode"=encode_H3K27ac, "CnT"=CnT_H3K27ac)  
my_plot <- width_boxplot(peaklist = peaklist)

neurogenomics/EpiCompare documentation built on Oct. 18, 2024, 11:04 p.m.