ncrna/Yeskit: Yet Another Single-Cell Analysis Toolkit (Yeskit)

This is a single-cell analysis tookit. It can be used for single-cell gene expression matrices importation, data integration, clustering, differential analysis, functional analysis, and visualization. It obeys the default data structure of Seurat, and stores pathogen expression data and pathway enrichment scores in the obj@meta.data slot and stores differential gene analysis results and GO enrichment results in the obj@misc slot. Besides, Yeskit has the option to rasterize the geom_point layer of ggplot2, while keep all axes, labels, and text in vector format.

install.packages("remotes")
remotes::install_github("ncrna/Yeskit")