In navinlabcode/copykit: CopyKit

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

CopyKit

Overview

The goal of CopyKit is to help you analyze single cell DNA sequencing datasets for copy number. For that, CopyKit presents four modules:

1) Pre-processing 2) Quality Control 3) Data Analysis 4) Visualization

Installation

You can install the development version of CopyKit from github with:

devtools::install_github("navinlabcode/copykit")

CopyKit requires R version 4.0 or later.

Documentation

The complete documentation can be found at: https://navinlabcode.github.io/CopyKit-UserGuide/

Issues

CopyKit has not yet been peer-reviewed so please use it with caution. We do our best to provide a bug free software, however CopyKit is in its infancy and some growing pains are expected. Please let us know of any issues and we will be happy to take a look at it. We greatly appreciate suggestions. Please make sure to, if possible, include a reproducible example and the output of your sessionInfo() when opening an issue.