Files in natureanalytics-ca/BycatchEstimator
Generic Model-Based Bycatch Estimation Procedure

.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
BycatchEstimator.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/BycatchEstimator.R R/bycatchFunctions.R R/dataCheck.R R/dataExamples.R R/modelFitFunction.R R/modelSetupFunction.R README.Rmd README.md data-raw/LLSIMExampleData.R
data-raw/TotalAnnualCatches.csv
data-raw/examplelog.csv
data-raw/exampleobs.csv
data-raw/iconMaker.R
data-raw/logtrip05.csv
data-raw/obstrip05.csv
data-raw/simpleExampleData.R
data/LLSIM_BUM_Example_logbook.rda
data/LLSIM_BUM_Example_observer.rda
data/logdatExample.rda
data/obsdatExample.rda
docs/404.html
docs/articles/UserGuide2.html
docs/articles/index.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.1.0/font.css
docs/deps/bootstrap-5.1.0/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVs9pbCIPrc.woff
docs/deps/bootstrap-5.1.0/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVvaorCIPrc.woff
docs/deps/bootstrap-5.1.0/fonts/4iCs6KVjbNBYlgo6ew.woff
docs/deps/bootstrap-5.1.0/fonts/4iCs6KVjbNBYlgoKfw7w.woff
docs/deps/bootstrap-5.1.0/fonts/4iCv6KVjbNBYlgoCxCvTtA.woff
docs/deps/bootstrap-5.1.0/fonts/4iCv6KVjbNBYlgoCxCvjsGyL.woff
docs/deps/bootstrap-5.1.0/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDQ.woff
docs/deps/bootstrap-5.1.0/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPa7j.woff
docs/deps/bootstrap-5.1.0/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3aPA.woff
docs/deps/bootstrap-5.1.0/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7j.woff
docs/deps/bootstrap-5.1.0/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rAkw.woff
docs/deps/bootstrap-5.1.0/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vAkw.woff
docs/deps/bootstrap-5.1.0/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdo.woff
docs/deps/bootstrap-5.1.0/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zAkw.woff
docs/deps/bootstrap-5.1.0/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlxdo.woff
docs/deps/bootstrap-5.1.0/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNRevw.woff
docs/deps/bootstrap-5.1.0/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvaNA.woff
docs/deps/bootstrap-5.1.0/fonts/CSR64z1Qlv-GDxkbKVQ_TOQ.woff
docs/deps/bootstrap-5.1.0/fonts/CSR64z1Qlv-GDxkbKVQ_fOAKSw.woff
docs/deps/bootstrap-5.1.0/fonts/JTURjIg1_i6t8kCHKm45_ZpC7g0.woff
docs/deps/bootstrap-5.1.0/fonts/JTURjIg1_i6t8kCHKm45_dJE7g0.woff
docs/deps/bootstrap-5.1.0/fonts/JTUSjIg1_i6t8kCHKm45xW0.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmEU9fBBc-.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmEU9vAA.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmSU5fBBc-.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmSU5vAA.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmWUlfBBc-.woff
docs/deps/bootstrap-5.1.0/fonts/KFOlCnqEu92Fr1MmWUlvAA.woff
docs/deps/bootstrap-5.1.0/fonts/KFOmCnqEu92Fr1Me5g.woff
docs/deps/bootstrap-5.1.0/fonts/KFOmCnqEu92Fr1Mu4mxM.woff
docs/deps/bootstrap-5.1.0/fonts/QGYpz_kZZAGCONcK2A4bGOj8mNhL.woff
docs/deps/bootstrap-5.1.0/fonts/S6u8w4BMUTPHjxsAXC-s.woff
docs/deps/bootstrap-5.1.0/fonts/S6u8w4BMUTPHjxswWA.woff
docs/deps/bootstrap-5.1.0/fonts/S6u9w4BMUTPHh6UVSwiPHw.woff
docs/deps/bootstrap-5.1.0/fonts/S6u9w4BMUTPHh6UVeww.woff
docs/deps/bootstrap-5.1.0/fonts/S6u9w4BMUTPHh7USSwiPHw.woff
docs/deps/bootstrap-5.1.0/fonts/S6u9w4BMUTPHh7USeww.woff
docs/deps/bootstrap-5.1.0/fonts/S6uyw4BMUTPHjx4wWA.woff
docs/deps/bootstrap-5.1.0/fonts/S6uyw4BMUTPHvxo.woff
docs/deps/bootstrap-5.1.0/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuFuYMZs.woff
docs/deps/bootstrap-5.1.0/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuI6fMZs.woff
docs/deps/bootstrap-5.1.0/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuLyfMZs.woff
docs/deps/bootstrap-5.1.0/fonts/XRXV3I6Li01BKof4MQ.woff
docs/deps/bootstrap-5.1.0/fonts/XRXW3I6Li01BKofA6sKkZQ.woff
docs/deps/bootstrap-5.1.0/fonts/XRXW3I6Li01BKofAjsOkZQ.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkWVAexg.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkWVAexg.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjWVAexg.woff
docs/deps/bootstrap-5.1.0/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1x4gaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1y4k.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0B4gaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0C4k.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0B4gaVQ.woff
docs/deps/bootstrap-5.1.0/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0C4k.woff
docs/deps/bootstrap-5.1.0/fonts/pe03MImSLYBIv1o4X1M8cc9iB_5p.woff
docs/deps/bootstrap-5.1.0/fonts/pe0qMImSLYBIv1o4X1M8cfe5.woff
docs/deps/bootstrap-5.1.0/fonts/q5uGsou0JOdh94bfvQlr.woff
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BycatchEstimator-package.html
docs/reference/CheckForPositives.html
docs/reference/CheckForPositivesPlot.html
docs/reference/FitModelFunc.html
docs/reference/FitModelFuncCV.html
docs/reference/LLSIM_BUM_Example_logbook.html
docs/reference/LLSIM_BUM_Example_observer.html
docs/reference/MakeSummary.html
docs/reference/ResidualsFunc.html
docs/reference/Rplot001.png
docs/reference/areaDivide.html
docs/reference/areaGOM.html
docs/reference/areafunc.html
docs/reference/bycatchFit.html
docs/reference/bycatchSetup.html
docs/reference/figures/fish-g119836312_640.png
docs/reference/figures/imgfile.png
docs/reference/findBestModelFunc.html
docs/reference/fishTimeFunc.html
docs/reference/getME.html
docs/reference/getRMSE.html
docs/reference/getRange.html
docs/reference/getSimDeltaLN.html
docs/reference/getSimSE.html
docs/reference/getdatefunc.html
docs/reference/getdatefunc2.html
docs/reference/gettimefunc2.html
docs/reference/goodman.var.html
docs/reference/ilogit.html
docs/reference/index.html
docs/reference/length.unique.html
docs/reference/lnorm.mean.html
docs/reference/lnorm.se.html
docs/reference/lo.se.html
docs/reference/logdatExample.html
docs/reference/makeIndexVar.html
docs/reference/makePredictions.html
docs/reference/makePredictionsDeltaVar.html
docs/reference/makePredictionsNoVar.html
docs/reference/makePredictionsSimVar.html
docs/reference/makePredictionsSimVarBig.html
docs/reference/mostfreqfunc.html
docs/reference/norm.mean.html
docs/reference/norm.se.html
docs/reference/obsdatExample.html
docs/reference/outlierCountFunc.html
docs/reference/plotCrossVal.html
docs/reference/plotIndex.html
docs/reference/plotSums.html
docs/reference/plotSumsValidate.html
docs/reference/ratio.func.html
docs/reference/ratioVar.html
docs/reference/seasonfunc.html
docs/reference/simulateGammaDraw.html
docs/reference/simulateNegBin1Draw.html
docs/reference/simulateNegBinGam.html
docs/reference/simulateTMBTweedieDraw.html
docs/reference/simulateTweedie.html
docs/reference/standard.error.html
docs/reference/yearfunc.html
docs/search.json
docs/sitemap.xml
figures/baseplot.png
inst/Markdown/PrintDataSummary.Rmd inst/Markdown/PrintResults.Rmd inst/Markdown/printDataChecks.Rmd inst/UserGuide/LLSIMExampleData.R inst/UserGuide/UserGuide.Rmd inst/UserGuide/UserGuide.pdf man/BycatchEstimator-package.Rd man/CheckForPositives.Rd man/CheckForPositivesPlot.Rd man/FitModelFunc.Rd man/FitModelFuncCV.Rd man/Gm.Rd man/LLSIM_BUM_Example_logbook.Rd man/LLSIM_BUM_Example_observer.Rd man/MakeSummary.Rd man/ResidualsFunc.Rd man/areaDivide.Rd man/areaGOM.Rd man/areafunc.Rd man/bycatchFit.Rd man/bycatchSetup.Rd man/dataCheck.Rd man/deltaEstimatorMean.Rd man/deltaEstimatorSE2.Rd man/deltaEstimatorVar.Rd
man/figures/fish-g119836312_640.png
man/figures/imgfile.png
man/findBestModelFunc.Rd man/fishTimeFunc.Rd man/getDesignEstimates.Rd man/getME.Rd man/getPooling.Rd man/getRMSE.Rd man/getRange.Rd man/getSimDeltaLN.Rd man/getSimSE.Rd man/getdatefunc.Rd man/getdatefunc2.Rd man/gettimefunc2.Rd man/goodman.var.Rd man/ilogit.Rd man/length.unique.Rd man/lnorm.mean.Rd man/lnorm.se.Rd man/lo.se.Rd man/logdatExample.Rd man/makeIndexVar.Rd man/makePredictions.Rd man/makePredictionsDeltaVar.Rd man/makePredictionsNoVar.Rd man/makePredictionsSimVarBig.Rd man/mostfreqfunc.Rd man/norm.mean.Rd man/norm.se.Rd man/obsdatExample.Rd man/outlierCountFunc.Rd man/plotCrossVal.Rd man/plotIndex.Rd man/plotSums.Rd man/plotSumsValidate.Rd man/ratio.func.Rd man/ratioVar.Rd man/seasonfunc.Rd man/simulateGammaDraw.Rd man/simulateNegBin1Draw.Rd man/simulateNegBinGam.Rd man/simulateTMBTweedieDraw.Rd man/simulateTweedie.Rd man/standard.error.Rd man/yearfunc.Rd
vignettes/.gitignore
vignettes/InstallationGuide.Rmd vignettes/UserGuide2.Rmd
vignettes/userguide.bib
natureanalytics-ca/BycatchEstimator documentation built on Oct. 15, 2024, 10:28 p.m.