mikelove/tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Michael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb], Avi Srivastava [ctb] |
| Bioconductor views | DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics |
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| License | LGPL (>=2) |
| Version | 1.31.1 |
| URL | https://github.com/thelovelab/tximport |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
