R/data.R

In martingarridorc/biokit: Toolkit for the automatic analysis of omics data

#' RNA-Seq data of human cell lines infected with sars-cov-2
#'
#' A matrix containing the gene-level counts for the GEO entry GSE147507.
#'
#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE147507}
"sarsCovMat"

#' Sample level information for the sars-cov-2 count matrix
#'
#' A data frame containing the relevant information for each sample of the GSE147507 study.
#'
#' @source \url{https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE147507}
"sarsCovSampInfo"

#' Human MSigDb hallmarks
#'
#' A list of vectors containing the functional categories defined by the MSigDb functional hallmarks.
#'
#' @source \url{https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp}
"humanHallmarks"