luciansmith/copynumber: Segmentation of single- and multi-track copy number data by penalized least squares regression.
Penalized least squares regression is applied to fit piecewise constant curves to copy number data to locate genomic regions of constant copy number. Procedures are available for individual segmentation of each sample, joint segmentation of several samples and joint segmentation of the two data tracks from SNP-arrays. Several plotting functions are available for visualization of the data and the segmentation results.
Getting started
Browse package contents
Package details |
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| Author | Gro Nilsen, Knut Liestoel and Ole Christian Lingjaerde. Changes by Lucian Smith |
| Bioconductor views | CopyNumberVariation Genetics SNP Visualization aCGH |
| Maintainer | Gro Nilsen <gronilse@ifi.uio.no> |
| License | Artistic-2.0 |
| Version | 1.17.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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