Files in lmweber/diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clustering
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/1_prepareData.R
R/2_transformData.R
R/3_generateClusters.R
R/calcCounts.R
R/calcMedians.R
R/calcMediansByClusterMarker.R
R/calcMediansBySampleMarker.R
R/createContrast.R
R/createDesignMatrix.R
R/createFormula.R
R/diffcyt_wrapper.R
R/plotHeatmap.R
R/testDA_GLMM.R
R/testDA_edgeR.R
R/testDA_voom.R
R/testDS_LMM.R
R/testDS_limma.R
R/topClusters.R
R/topTable.R
README.md
inst/CITATION
inst/NEWS
man/calcCounts.Rd
man/calcMedians.Rd
man/calcMediansByClusterMarker.Rd
man/calcMediansBySampleMarker.Rd
man/createContrast.Rd
man/createDesignMatrix.Rd
man/createFormula.Rd
man/diffcyt.Rd
man/generateClusters.Rd
man/plotHeatmap.Rd
man/prepareData.Rd
man/testDA_GLMM.Rd
man/testDA_edgeR.Rd
man/testDA_voom.Rd
man/testDS_LMM.Rd
man/testDS_limma.Rd
man/topClusters.Rd
man/topTable.Rd
man/transformData.Rd
tests/testthat.R
tests/testthat/helper_create_example_data.R
tests/testthat/test_prepareData.R
vignettes/diffcyt.png
vignettes/diffcyt_workflow.Rmd
