.github/ISSUE_TEMPLATE/issue-report.md

In lima1/PureCN: Copy number calling and SNV classification using targeted short read sequencing

name: Issue report about: For issues related to your PureCN output, please use this template if possible. Otherwise start with a blank issue. title: '' labels: '' assignees: ''

Describe the issue A clear and concise description of what the issue is.

To Reproduce Copy and paste your complete command line arguments from PureCN.R. If possible and potentially relevant, also copy the output of NormalDB.R and Coverage.R.

Expected behavior A clear and concise description of what you expected to happen.

Log file Please copy and paste the log file (Sampleid.log) of a representative example

B-allele frequency plot Please take a screenshot of the B-allele frequency plot of the maximum likelihood solution (Sampleid.pdf).

Session Info Please start R, type sessionInfo() and paste the output.

lima1/PureCN documentation built on Sept. 17, 2024, 5:48 a.m.