NEWS.md
In lgatto/pRolocGUI: Interactive visualisation of spatial proteomics data

pRolocGUI 2.15

Fix bug in compare app when selecting marker classes and plotting the map
Change organlle profile plots to 25% and 75% quantiles

Remap in aggregation app.

New version for Bioc devel

pRolocGUI 2.14

New version for Bioc release 3.19

pRolocGUI 2.13

New version for Bioc devel 3.19

pRolocGUI 2.12

Bioconductor release 3.18

pRolocGUI 2.11

New version for Bioc devel

Fix bug in DT table when fData column is a matrix see issue #117

pRolocGUI 2.10

Bioconductor release 3.17

pRolocGUI 2.9

New version for Bioc 3.17

Fix bugs in table selection in explore and compare app
Fix transparency slider in explore app

pRolocGUI 2.8

Biocondutor release 3.16

pRolocGUI 2.7

Explicitly add remap function for aggregation app

Move LMB as maintainer
Update URLs for Github repo
Removed deprecated cogs icon to gears
Fix bug in shinyhelper

New version for Bioc 3.15

pRolocGUI 2.5

Fixed issue #108 by removing scrollX known issue in DT package

Update README

fix #109 bug in pRolocVis when 'markers' is missing from fvarLabels
fontawesome deprecated switch to cogs for sidebar
fix bug in colour menu #110 attributed from shinyWidgets changing the class name from checkboxGroupButtons to checkbox-group-buttons

New version for Bioc

pRolocGUI 2.3

New version for Bioc

pRolocGUI 2.1

added and renames buttons for downloading data
fixed issue #104 that occurs when marker classes have only 1 member

re-write of code to fix the breaking changes introduced by shinydashboardPlus v2
depend on shinydashboardPlus 2.0.0
fixed bug in pRolocVis which fails when no fcol explicitly called markers is not present
added argument classProfiles to compare and explore apps so that users can choose to display class specific profiles

fixed typos in vigentte
fixed typos in explore and compare apps UIs

pRolocGUI 2.0

New version for Bioc release

pRolocGUI 1.99

fixed warning in profiles plot
fixed colour matching in factet plot

Apps updated to new shinydashboardPlus style
Options to save plots as high res images
User set colourpicker for creating figures
Support for data export to csv
Support batch import searching
PCA app has been replaced with explore app
New aggregation app
Classify app removed

pRolocGUI 1.21

Depend on latest pRoloc

Keep only one maintainer

Update email

pRolocGUI 1.15

Update NEWS and pkgdown site

Replace BiocInstaller biocLite mentions with BiocManager

New version for Bioc devel

pRolocGUI 1.14

New version for Bioc release

pRolocGUI 1.13

Catch unnecessary idDT error produced on exit <2018-04-23 Mon>

Update pRolocVis documentation do show how to use precomputed coordinates (see issue #92) <2018-03-16 Fri>

pRolocGUI 1.12

Biocondutor release 3.6

pRolocGUI 1.11

Rename the main app pca app <2017-08-21 Mon>

Fix links in vignette to point to new html pRoloc vignettes <2017-05-30 Tue>

Avoid computing dimensionality reduction at every reactive rendering, assuring that other, slower methods, in particular t-SNE, can be used <2017-05-20 Sat>

New version for Bioc devel 3.6

pRolocGUI 1.10

New version for Bioc release 3.5

pRolocGUI 1.9

Fix broken documentation files <2017-01-18 Wed>
New aggregation app added <2017-01-22 Wed>

fixed remap=FALSE bug in compare app <2017-01-12 Thu>
Added mirrorX and mirrorY to the compare app <2017-01-12 Thu>

Update vignette use latest BiocStyle::html_document2() with floating table-f content <2016-12-30 Fri>
Change to NEWS.md <2016-12-30 Fri>
mirrorX and mirrorY are now ignored in pRolocVis - see issue #84 <2017-01-11 Wed>

Remove accidental merging left-over <2016-12-13 Tue>

Remove accidental call to browser

Bioc devel 3.5

pRoloc 1.8

Bioc release 3.4

pRoloc 1.7

Various bug fixes <2016-10-07 Fri>

Add DT version dependency (see issue #71) <2016-08-09 Tue>

Fixed bug with matrix-f markers in fcol. Now if-ne-f the columns in the feature data is a matrix, it is converted to a vector using mrkMatToVec. This helps clarity and reduces wasted table space-f 1's and 0's. <2016-07-29 Fri>
Fixed bug in pRolocVis_compare application. Same issue as above with passing matrix as a fcol which manifested as an extra issue with zooming. Now fixed. <2016-07-29 Fri>

pRoloc 1.5

Fixed bug in pRolocVis in converting GO ids <2016-05-26 Thu>

Removing plotMat2D app (closes issue #69) <2016-03-11 Fri>
add package startup msg <2016-03-11 Fri>
instruct users to install latest version from github

Depend-n DT >= 0.1.40

replace getLisacol by getStockcol (which are now Lisa's colours; since pRoloc version 1.11.9) <2016-02-16 Tue>

update refs in vignette <2016-02-09 Tue>

Updated pca app <2016-01-11 Mon>
Updated vignette <2016-01-12 Tue>
Fixed bugs, pca app renamed main app, removed profiles app <2016-01-14 Thu>
new compare app <2016-01-30 Sat>
updated vignette <2016-02-03 Wed>

New shiny apps <2015-10-12 Mon>
New vignette <2015-10-29 Thu>
Fixed bugs and updated examples in classify app <2015-11-09 Mon>

Bioc devel 3.3

pRoloc 1.4

Bioc release 3.2

pRoloc 1.3

Fix check warnings and errors <2015-07-20 Mon>

new plotMat2D function <2015-05-20 Wed>
Fix query search in pRolocVis, contributed by pierremj <2015-05-27 Wed>
pRolocVis has new method arg <2015-05-29 Fri>

Devel for Bioc 3.2

pRoloc 1.2

Release for Bioc 3.1

pRoloc 1.1

updating failing unit test [2015-04-03 Fri]

fix R_HOME error [2015-02-26 Thu]

don't require GNU make [2015-02-11 Wed]

Fix bug with FoIs and multiple data sets (reported by Harriet Parsons) [2015-02-06 Fri]

Update README with uptodate installation instructions [2014-10-14 Tue]
handling and filtering missing value in input data [2014-10-21 Tue]

pRoloc 1.0

Release for Bioc 3.0 [2014-10-14 Tue]

pRoloc 0.99

added Video tag in DESCRIPTION [2014-10-07 Tue]

Add screenshot to README [2014-09-05 Fri]
fix bug when features-f fois are not present
move data tab to the end

Updated README [2014-09-04 Thu]
Remove-ld R code file [2014-09-04]

fix vignette error-n Windows (Dan Tenenbaum) [2014-08-26 Tue]

selection and display-f multiple features-f interest in pRolocVis and pRolocComp [2014-08-13 Wed]

display feature meta-data instead-f protein name when hovering [2014-07-27 Tue]
better feature highlighting [2014-07-27 Tue] --nly 1 vignette [2014-07-27 Tue]

support mirroring-f PCA plots in pRolocComp [2014-07-22 Tue]

Update to latest knitcitations version and fix vignette [2014-07-15 Tue]

add function pRolocComp [2014-06-24 Tue]

multiple-bjects can be passed to pRolocVis by using a list [2014-06-03 Tue]
improve query search (submit and select check box) [2014-06-02 Mon]
add unit tests for helper functions and add manual unit test [2014-06-03 Tue]

change access and assignment to-bject pRolocGUI_SearchResults in .GlobalEnv [2014-05-30 Fri]

fix biocViews [2014-05-27 Tue]
misc refactoring [2014-05-27 Tue]

Bioc submission

lgatto/pRolocGUI documentation built on Nov. 3, 2024, 5:01 a.m.

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