R/tidy_add_contrasts.R

In larmarange/broom.helpers: Helpers for Model Coefficients Tibbles

#' Add contrasts type for categorical variables
#'
#' Add a `contrasts` column corresponding to contrasts used for a
#' categorical variable and a `contrasts_type` column equal to
#' "treatment", "sum", "poly", "helmert", "other" or "no.contrast".
#'
#' @details
#' If the `variable` column is not yet available in `x`,
#' [tidy_identify_variables()] will be automatically applied.
#'
#' @param x (`data.frame`)\cr
#' A tidy tibble as produced by `tidy_*()` functions.
#' @param model (a model object, e.g. `glm`)\cr
#' The corresponding model, if not attached to `x`.
#' @param quiet (`logical`)\cr
#' Whether broom.helpers should not return a message
#' when `tidy_disambiguate_terms()` was already applied
#' @export
#' @family tidy_helpers
#' @examples
#' df <- Titanic |>
#'   dplyr::as_tibble() |>
#'   dplyr::mutate(Survived = factor(Survived, c("No", "Yes")))
#'
#' glm(
#'   Survived ~ Class + Age + Sex,
#'   data = df, weights = df$n, family = binomial,
#'   contrasts = list(Age = contr.sum, Class = "contr.helmert")
#' ) |>
#'   tidy_and_attach() |>
#'   tidy_add_contrasts()
tidy_add_contrasts <- function(x, model = tidy_get_model(x), quiet = FALSE) {
  if (is.null(model)) {
    cli::cli_abort(c(
      "{.arg model} is not provided.",
      "You need to pass it or to use {.fn tidy_and_attach}."
    ))
  }

  .attributes <- .save_attributes(x)

  if ("contrasts" %in% names(x)) {
    x <- x |> dplyr::select(-dplyr::all_of("contrasts"))
  }

  if (!"variable" %in% names(x)) {
    if (!quiet) {
      x <- x |> tidy_identify_variables()
    }
  }

  contrasts_list <- model_list_contrasts(model)
  if (is.null(contrasts_list)) {
    x$contrasts <- NA_character_
    x$contrasts_type <- NA_character_
  } else {
    x <- x |>
      dplyr::left_join(
        contrasts_list |>
          dplyr::select(dplyr::all_of(c("variable", "contrasts", "contrasts_type"))),
        by = "variable"
      )
  }
  x |>
    tidy_attach_model(model = model, .attributes = .attributes)
}