Man pages for krumsieklab/MoDentify
Phenotype-driven module identification
| aggregatedMean | Aggregated Mean Scores |
| calculateModuleRepresentatives | Calculate Module Representative |
| calculateModuleScore | Calculate Module-score |
| deleteDuplicates | Delete Duplicates from Modules |
| deleteSupergraphs | Delete Supergraphs from Modules |
| drawModule | Draw Single Module |
| drawModules | Draw Modules |
| drawNetworkWithModules | Draw Network with Modules |
| eigenMetabolites | Calculate eigenmetabolites as representatives |
| generateNetwork | Network inference with Gaussian graphical models (GGMs) or... |
| generatePathwaysNetwork | Subnetwork Creation function |
| getMergedModules | Get Module scores for Merged Modules |
| getNeighborsForModule | Get Neighbors for Module |
| getToMerge | Get Overlaping Modules |
| ggEdgesBetweenAttributes | Plotting of the edges between attribute types |
| ggExplainedVariance | Plotting of the explained variances |
| greedyModuleSelection | Greedy Module Selection for a Seed |
| identifyModules | Module Identification |
| linearScoring | Linear Scoring Function |
| MoDentify-package | Phenotype-driven module identification |
| orderAnnotation | Order Annotations |
| qmdiab.annos | qmdiab annotations |
| qmdiab.data | qmdiab data |
| qmdiab.phenos | qmdiab phenotypes |
| writeModules | Export Modules |
