katiasmirn/PERFect: Permutation filtration for microbiome data
PERFect is a novel permutation filtering approach designed to address two unsolved problems in microbiome data processing: (i) define and quantify loss due to filtering by implementing thresholds, and (ii) introduce and evaluate a permutation test for filtering loss to provide a measure of excessive filtering.
Getting started
Browse package contents
Package details |
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| Author | Ekaterina Smirnova <ekaterina.smirnova@vcuhealth.org>, Quy Cao <quy.cao@umontana.edu> |
| Bioconductor views | Classification Metagenomics Microbiome Sequencing Software |
| Maintainer | Quy Cao <quy.cao@umontana.edu> |
| License | Artistic-2.0 |
| Version | 0.2.4 |
| URL | https://github.com/katiasmirn/PERFect |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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