API for jstansfield0/HiCcompare2
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
| Global functions | |
|---|---|
| .MD.hicexp.chr | Source code |
| .MD.smooth | Source code |
| .check_tables | Source code |
| .cloess | Source code |
| .et_reformat | Source code |
| .fastlo | Source code |
| .fastlo_condition | Source code |
| .get_dist_tables | Source code |
| .glm_reformat | Source code |
| .hictable2DGEList | Source code |
| .loess.as | Source code |
| .loess_condition | Source code |
| .scale_chr | Source code |
| HCT116_r1 | Man page |
| HCT116_r2 | Man page |
| HCT116_r3 | Man page |
| HCT116_r4 | Man page |
| HCT116_r5 | Man page |
| HCT116_r6 | Man page |
| Hicexp-class | Man page |
| MD_composite | Man page Source code |
| MD_hicexp | Man page Source code |
| cyclic_loess | Man page Source code |
| exportJuicebox | Man page Source code |
| fastlo | Man page Source code |
| hg19_cyto | Man page |
| hg38_cyto | Man page |
| hic_exactTest | Man page Source code |
| hic_filter | Man page Source code |
| hic_glm | Man page Source code |
| hic_scale | Man page Source code |
| hic_table | Man page |
| hic_table,Hicexp-method | Man page |
| hic_table,character,ANY-method | Man page |
| hicexp2 | Man page |
| hicexp_diff | Man page |
| make_hicexp | Man page Source code |
| manhattan_hicexp | Man page Source code |
| meta | Man page |
| meta,Hicexp-method | Man page |
| meta,character,ANY-method | Man page |
| normalized | Man page |
| normalized,Hicexp-method | Man page |
| normalized,character,ANY-method | Man page |
| perm_test | Man page Source code |
| plot_counts | Man page Source code |
| plot_pvals | Man page Source code |
| pval_heatmap | Man page Source code |
| resolution | Man page |
| resolution,Hicexp-method | Man page |
| resolution,character,ANY-method | Man page |
| results | Man page |
| results,Hicexp-method | Man page |
| results,character,ANY-method | Man page |
| show,Hicexp-method | Man page |
| show,character,ANY-method | Man page |
| smartApply | Man page Source code |
| topDirs | Man page Source code |
