ssvFeatureEuler: Try to load a bed-like file and convert it to a GRanges...

In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data

Try to load a bed-like file and convert it to a GRanges object

Description

Try to load a bed-like file and convert it to a GRanges object

Usage

ssvFeatureEuler(
  object,
  line_width = 2,
  shape = c("circle", "ellipse")[1],
  n_points = 200,
  fill_alpha = 0.3,
  line_alpha = 1,
  circle_colors = NULL,
  return_data = FALSE
)

Arguments

object	A membership table
line_width	numeric, passed to size aesthetic to control line width
shape	shape argument passed to eulerr::euler
n_points	number of points to use for drawing ellipses, passed to eulerr:::ellipse
fill_alpha	numeric value from 0 to 1. Alpha value for circle fill
line_alpha	numeric value from 0 to 1. Alpha value for circle line
circle_colors	colors to choose from for circles. passed to ggplot2 color scales.
return_data	logical. If TRUE, return value is no longer ggplot and is instead the data used to generate that plot. Default is FALSE.

Value

ggplot of venneuler results

Examples

data(CTCF_in_10a_overlaps_gr)
ssvFeatureEuler(list(1:3, 2:6))
ssvFeatureEuler(CTCF_in_10a_overlaps_gr)
ssvFeatureEuler(S4Vectors::mcols(CTCF_in_10a_overlaps_gr)[,2:3])

jrboyd/seqsetvis documentation built on Oct. 15, 2024, 11:28 p.m.