seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file). seqsetvis has multiple functions for fetching data from regions into a tidy format for analysis in data.table or tidyverse and visualization via ggplot2.
Package details |
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Bioconductor views | ChIPSeq MultipleComparison Sequencing Software Visualization |
Maintainer | |
License | MIT + file LICENSE |
Version | 1.25.5 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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