tests/testthat/test_corr_by_Rle_shiftApply.R
In jrboyd/peakrefine: Peak Refinement Metric Gathering and Evalutation by Motif Enrichment
library(peakrefine)
library(GenomicRanges)
library(testthat)
library(data.table)
bam_file = system.file("extdata", "MCF10A_CTCF.random5.bam", package = "peakrefine")
bam_input = system.file("extdata", "MCF10A_input.random5.bam", package = "peakrefine")
np = system.file("extdata", "MCF10A_CTCF.random5.narrowPeak", package = "peakrefine")
np = rtracklayer::import(np, format = "narrowPeak")
test_that("crossCorrByExtension", {
crossCorrByRle(bam_file, np)
})
jrboyd/peakrefine documentation built on July 30, 2020, 7:13 p.m.
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library(peakrefine)
library(GenomicRanges)
library(testthat)
library(data.table)
bam_file = system.file("extdata", "MCF10A_CTCF.random5.bam", package = "peakrefine")
bam_input = system.file("extdata", "MCF10A_input.random5.bam", package = "peakrefine")
np = system.file("extdata", "MCF10A_CTCF.random5.narrowPeak", package = "peakrefine")
np = rtracklayer::import(np, format = "narrowPeak")
test_that("crossCorrByExtension", {
crossCorrByRle(bam_file, np)
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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