Files in jokergoo/cotools

R functions

R/chromatin_states_transitions.R R/common_utils.R R/extract_site.R R/gencode_utils.R R/genomic_region_annotation.R R/genomic_region_correlation.R R/genomic_region_merge.R R/genomic_region_stat.R R/genomic_region_subgroup_specificity.R R/methylation_cr.R R/methylation_cr_downstream.R R/methylation_cr_enriched.R R/methylation_cr_gviz.R R/methylation_cr_scatterplot.R R/methylation_genomic_features.R R/methylation_hooks.R R/methylation_stat.R R/systemdf.R README.md candidate/coProject.R candidate/expression.R candidate/global.R candidate/mutation.R candidate/qsub.R candidate/utils.R man/add_subtype_specificity.rd man/annotate_to_gene_models.rd man/annotate_to_genomic_features.rd man/available_gencode_field.rd man/basic_genomic_regions_stat.rd man/bp.rd man/chromatin_states_transition_chord_diagram.rd man/common_regions.rd man/compare_meth.rd man/correlated_regions.rd man/correlated_regions_per_gene.rd man/cr_enriched_at_tss.rd man/cr_gviz.rd man/cr_hilbert.rd man/cr_overlap_to_genomic_features.rd man/cr_qc.rd man/cr_scatterplot_me.rd man/enriched_heatmap_list_on_gene.rd man/enriched_heatmap_list_on_genomic_features.rd man/enriched_heatmap_list_on_tss_cgi.rd man/extract_field_from_gencode.rd man/extract_sites.rd man/filter_correlated_regions.rd man/genomicCorr.absdist.rd man/genomicCorr.jaccard.rd man/genomicCorr.nintersect.rd man/genomicCorr.pintersect.rd man/genomicCorr.reldist.rd man/genomicCorr.sintersect.rd man/genomic_regions_correlation.rd man/get_mean_methylation_in_genomic_features.rd man/global_methylation_distribution.rd man/heatmap_diff_methylation_in_genomic_features.rd man/kb.rd man/logical_segment.rd man/mb.rd man/methylation_hooks.rd man/percentOverlaps.rd man/plot_coverage_and_methylation_on_genome.rd man/plot_multiple_samples_methylation_on_genome.rd man/plot_subgroup_specificity_heatmap.rd man/print.bp.rd man/reduce2.rd man/reduce_cr.rd man/reduce_cr_gap_test.rd man/scatterplot_with_boxplot.rd man/subgroup_specific_genomic_regions.rd man/systemdf.rd man/wgbs_qcplot.rd pipeline/PMD_DMV_gene_expression.R pipeline/chromHMM_states_transitions.R pipeline/cr.R pipeline/cr_downstream.R pipeline/cr_enriched.R pipeline/cr_filter.R pipeline/cr_gviz.R pipeline/expr_classification.R pipeline/expr_cr.R pipeline/global_methylation_info.R pipeline/head/head.R pipeline/methylated_regions_stat.R script/load_all.R test/cr.R test/cr_filter.R test/gviz.R test/heatmap.R test/pipeline.R test/test_oncoprint.R