top_rows_heatmap-ConsensusPartition-method: Heatmap of top rows

In jokergoo/cola: A Framework for Consensus Partitioning

Heatmap of top rows

Description

Heatmap of top rows

Usage

## S4 method for signature 'ConsensusPartition'
top_rows_heatmap(object, top_n = min(object@top_n), k = NULL,
    anno = get_anno(object), anno_col = get_anno_col(object),
    scale_rows = object@scale_rows, ...)

Arguments

object	A ConsensusPartition-class object.
top_n	Number of top rows.
k	Number of subgroups. If it is not specified, it uses the "best k".
anno	A data frame of annotations.
anno_col	A list of colors (color is defined as a named vector) for the annotations. If anno is a data frame, anno_col should be a named list where names correspond to the column names in anno.
scale_rows	Wether to scale rows.
...	Pass to top_rows_heatmap,matrix-method.

Value

No value is returned.

Author(s)

Zuguang Gu <[e-mail]>

See Also

top_rows_heatmap,matrix-method

Examples

data(golub_cola)
top_rows_heatmap(golub_cola["ATC:skmeans"])

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.