Extract.ConsensusPartitionList: Subset a ConsensusPartitionList object

In jokergoo/cola: A Framework for Consensus Partitioning

Subset a ConsensusPartitionList object

Description

Subset a ConsensusPartitionList object

Usage

## S3 method for class 'ConsensusPartitionList'
x[i, j, drop = TRUE]

Arguments

x	A ConsensusPartitionList-class object.
i	Index for top-value methods, character or nummeric.
j	Index for partitioning methods, character or nummeric.
drop	Whether drop class

Details

For a specific combination of top-value method and partitioning method, you can also subset by e.g. x['SD:hclust'].

Value

A ConsensusPartitionList-class object or a ConsensusPartition-class object.

Author(s)

Zuguang Gu <[e-mail]>

Examples

data(golub_cola)
golub_cola[c("SD", "MAD"), c("hclust", "kmeans")]
golub_cola["SD", "kmeans"] # a ConsensusPartition object
golub_cola["SD:kmeans"] # a ConsensusPartition object
golub_cola[["SD:kmeans"]] # a ConsensusPartition object
golub_cola["SD", "kmeans", drop = FALSE] # still a ConsensusPartitionList object
golub_cola["SD:kmeans", drop = FALSE] # still a ConsensusPartitionList object
golub_cola["SD", ]
golub_cola[, "hclust"]
golub_cola[1:2, 1:2]

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.