joey711/biomformat: An interface package for the BIOM file format
This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.
Getting started
Browse package contents
Package details |
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| Author | Paul J. McMurdie <mcmurdie@alumni.stanford.edu> and Joseph N Paulson <jpaulson@jimmy.harvard.edu> |
| Bioconductor views | DataImport ImmunoOncology Metagenomics Microbiome |
| Maintainer | Paul J. McMurdie <mcmurdie@alumni.stanford.edu> |
| License | GPL-2 |
| Version | 1.29.1 |
| URL | https://github.com/joey711/biomformat/ http://biom-format.org/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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